Saturday, March 22, 2025

 "Competing Non-Covalent Forces: Hydrogen vs. Chalcogen Bonding in Homodimers of Group 16 Hydrides"




Introduction to Non-Covalent Interactions in Group 16 Hydrides

Non-covalent interactions play a critical role in determining the structural and functional properties of molecular systems. Among these interactions, hydrogen bonding (HB) and chalcogen bonding (ChB) are two significant forces, particularly prevalent in compounds containing elements from Group 16 (oxygen, sulfur, selenium, and tellurium). Group 16 hydrides, such as water (H₂O), hydrogen sulfide (H₂S), hydrogen selenide (H₂Se), and hydrogen telluride (H₂Te), serve as excellent models to investigate the competition and coexistence of hydrogen and chalcogen bonding within homodimeric structures.

Hydrogen Bonding in Group 16 Hydride Dimers

Hydrogen bonding is traditionally the dominant non-covalent force in lighter hydrides like water. In (H₂O)₂ dimers, for instance, hydrogen bonding occurs between the hydrogen of one molecule and the lone pair on the oxygen atom of another. This interaction is strong and directional due to the high electronegativity and small atomic radius of oxygen. Similarly, in H₂S and H₂Se dimers, hydrogen bonding is present but comparatively weaker than in water due to the larger size and lower electronegativity of sulfur and selenium.

Emergence of Chalcogen Bonding with Heavier Group 16 Elements

As we progress down Group 16, chalcogen bonding becomes increasingly significant, especially with heavier atoms like tellurium. Chalcogen bonding involves the interaction of a nucleophile (such as a lone pair from another molecule) with the electrophilic region (σ-hole) present opposite to the covalent bond of the chalcogen atom (S, Se, Te). In H₂Te dimers, for example, the tellurium atom acts as a chalcogen bond donor through its σ-hole, resulting in ChB becoming competitive with, or even surpassing, hydrogen bonding in strength and importance.

Competing Nature of Hydrogen and Chalcogen Bonding

The balance between hydrogen bonding and chalcogen bonding in these dimers is influenced by several factors, including atomic size, polarizability, and electron density distribution. In lighter hydrides like H₂O and H₂S, hydrogen bonding dominates due to the insufficient development of σ-holes on oxygen and sulfur. However, in H₂Se and particularly in H₂Te, the increasing polarizability enhances the positive electrostatic potential at the σ-hole, leading to stronger chalcogen bonding. This competition is critical in defining the geometry and stability of the homodimers.

Computational Insights and Experimental Observations

Computational studies, such as those employing density functional theory (DFT) and molecular electrostatic potential (MEP) analysis, have provided valuable insights into the strength and nature of these interactions. Calculations show that for H₂O and H₂S dimers, the lowest energy configurations are stabilized primarily by hydrogen bonding, while for H₂Te dimers, chalcogen bonding becomes a key stabilizing factor. Experimental spectroscopic data, such as infrared and microwave spectroscopy, further corroborate these findings by detecting shifts in vibrational frequencies associated with both types of interactions.

Implications and Applications

Understanding the competition between hydrogen and chalcogen bonding in Group 16 hydride dimers has implications in diverse fields such as supramolecular chemistry, material design, and biochemistry. For example, the ability of heavier chalcogens to form strong chalcogen bonds is being exploited in the design of novel molecular recognition motifs and functional materials. In biological systems, sulfur and selenium-containing compounds may also exhibit chalcogen bonding, influencing protein folding, enzyme activity, and molecular recognition processes.

Conclusion

The interplay between hydrogen and chalcogen bonding in homodimers of Group 16 hydrides highlights the subtle yet crucial role of atomic properties such as size, polarizability, and electrostatic potential. While hydrogen bonding is predominant in lighter hydrides like water, chalcogen bonding becomes increasingly competitive in heavier hydrides such as H₂Se and H₂Te. This competition shapes the structural, thermodynamic, and spectroscopic characteristics of these dimers, offering insights into the broader realm of non-covalent chemistry.

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